actually none of them are transformed to MNI coords. They are all in original (scanner) coords
On Mon, 1 Feb 2010, leemon albert wrote: > Hey, thanks for your prompt reply. > > One more question, in subject/mri folder, only the Orig.mgz and T1.mgz > adjust the AC-PC alignment of the image to be closer to MNI orientation. > Because after the step of skullstrip, all volume use another origin. Is it > right? > > > On Mon, Feb 1, 2010 at 10:35 AM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu>wrote: > >> Hi Meng, >> >> no, we usually provide gray matter volumes, thicknesses and surface areas >> using the surfaces (although we do explicitly provide a voxel labeling in >> the aseg.mgz). It should all be reported in the various files in the stats >> dir. >> >> cheers >> Bruce >> >> On Mon, 1 Feb 2010, leemon albert wrote: >> >> Hey, all >>> >>> Whether the FS only segment the white matter volume (WM - mri/wm) by >>> default >>> . How about the GM? If I want to get GM volume, is it a right way to use >>> brain.mgz to subtract the wm.mgz? >>> >>> Best Wishes, >>> >>> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
