Hi experts,
I run freesurfer to compute the thickness, but I find some subjects failed with
error.
Would you please tell me how to handle this error. Thank you very much!
And the error is as follow:
....................................................................................
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6987,
pval=0.4932 >= threshold=0.0050)
awk -f /public/home/users/lzuxucl/freesurfer/bin/extract_talairach_avi_QA.awk
/public/home/users/lzuxucl/subjects/S45260/mri/transforms/talairach_avi.log
TalAviQA: 0.94844
z-score: -6
ERROR: Talairach QA check failed!
z-score = -6 <= -6 = threshold
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string.
See http://surfer..nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
Linux node5 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT 2007 x86_64 x86_64
x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Jan 11 15:52:39 CST 2010
Best,
Xiantong
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