Hi there, I moved my data to a new computer with Freesurfer installed. When i run the SetUpFreeSurfer.csh (or .sh for that matter) i get a strange configuration:
Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer/ FSFAST_HOME /usr/local/freesurfer//fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /usr/local/freesurfer//subjects MNI_DIR /usr/local/freesurfer//mni FSL_DIR /usr/local/fsl note the double slashes on SUBJECTS_DIR, FSFAST_DIR, and MNI_DIR. needless to say freesurfer can't find my data. I inspected the setup files and they don't have typo in them. what should i do? thanks ilana -- ******************************* Ilana Hairston ,PhD Research Assistant Professor 4250 Plymouth Rd. Psychiatry Department, Addiction Research Center University of Michigan, Ann Arbor MI 48109-2700 Tel: 734-232-0232; Mobile: 650-906-8449 ******************** Sentimental Insomnia and Nostalgia Disorders Sciences ********************
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