tkregister2 applies the transform to the native volume and displays (but doesn't save a transformed volume to disk)
On Thu, 19 Nov 2009, Rajagopalan, Venkateswaran wrote: > Thanks Dr.Bruce, one small clarification then, it is mentioned in the user > manual to verify this registration result before proceeding further so when i > used tkregister2 --sub2 --fstal-avi i could see two images one is the > original and the other one talairach atlas and they looked they are aligned > almost closely. So what is this image i looked at? > > Thanks > > venkateswaran > > > -----Original Message----- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Thu 11/19/2009 12:43 PM > To: Rajagopalan, Venkateswaran > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] talairach registration-result > > Hi Venkateswaran, > > we don't apply the tal xform,just compute it (in > mri/transforms/talairach.xfm), so there is no volume "after talairach". > > cheers, > Bruce > > On Thu, 19 Nov 2009, Rajagopalan, Venkateswaran wrote: > >> Dear Freesurfer Users, >> >> Could anyone please tell me what is the name of the image file after >> talairach registration for instance like nu.mgz (after intensity correction). >> >> Thanks >> >> venkateswaran >> >> >> >> =================================== >> >> P Please consider the environment before printing this e-mail >> >> Cleveland Clinic is ranked one of the top hospitals >> in America by U.S.News & World Report (2009). >> Visit us online at http://www.clevelandclinic.org for >> a complete listing of our services, staff and >> locations. >> >> >> Confidentiality Note: This message is intended for use >> only by the individual or entity to which it is addressed >> and may contain information that is privileged, >> confidential, and exempt from disclosure under applicable >> law. If the reader of this message is not the intended >> recipient or the employee or agent responsible for >> delivering the message to the intended recipient, you are >> hereby notified that any dissemination, distribution or >> copying of this communication is strictly prohibited. If >> you have received this communication in error, please >> contact the sender immediately and destroy the material in >> its entirety, whether electronic or hard copy. Thank you. >> > > > > =================================== > > P Please consider the environment before printing this e-mail > > Cleveland Clinic is ranked one of the top hospitals > in America by U.S.News & World Report (2009). > Visit us online at http://www.clevelandclinic.org for > a complete listing of our services, staff and > locations. > > > Confidentiality Note: This message is intended for use > only by the individual or entity to which it is addressed > and may contain information that is privileged, > confidential, and exempt from disclosure under applicable > law. If the reader of this message is not the intended > recipient or the employee or agent responsible for > delivering the message to the intended recipient, you are > hereby notified that any dissemination, distribution or > copying of this communication is strictly prohibited. If > you have received this communication in error, please > contact the sender immediately and destroy the material in > its entirety, whether electronic or hard copy. Thank you. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
