Hello, Bruce,
Thanks a lot for your help!
I ran 4 commands, and results are shown below:
1.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
mris_make_template lh smoothwm 018_S_0425_20060419_CN my_template0.tif
creating new parameterization...
processing subject 018_S_0425_20060419_CN (1 of 1)
reading spherical surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.smoothwm...
curvature mean = 0.000, std = 1.000
computing parameterization for surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.inflated.H...
curvature mean = -0.000, std = 0.602
computing parameterization for surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.sulc...
curvature mean = -0.016, std = 1.234
computing parameterization for surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.smoothwm...
writing updated template with 1 subjects to my_template0.tif...
2.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
mris_make_template lh sulc 018_S_0425_20060419_CN my_template0.tif
creating new parameterization...
processing subject 018_S_0425_20060419_CN (1 of 1)
reading spherical surface
/home/m047599/freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.sulc...
Segmentation fault
3.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
mris_make_template lh curv 018_S_0425_20060419_CN my_template0.tif
creating new parameterization...
processing subject 018_S_0425_20060419_CN (1 of 1)
reading spherical surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.curv...
Segmentation fault
4.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
mris_make_template lh sphere 018_S_0425_20060419_CN my_template0.tif
creating new parameterization...
processing subject 018_S_0425_20060419_CN (1 of 1)
reading spherical surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.sphere...
curvature mean = 0.000, std = 1.000
computing parameterization for surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.inflated.H...
curvature mean = -0.000, std = 0.602
computing parameterization for surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.sulc...
curvature mean = -0.016, std = 1.234
computing parameterization for surface
../freesurfer-install/freesurfer/subjects/018_S_0425_20060419_CN/surf/lh.smoothwm...
writing updated template with 1 subjects to my_template0.tif...
To me, Command 1 and 4 are kind of doing the same thing, right?
So I just need to call any one of them, right?
Command 2 and 3 are failed, is it because of my command line?
Actually, the results from command 1 and 4 showed that they have computed sulc,
do I still need run command 2 and command 3 in the "Prep Step"?
Thanks a lot!
Guang
> Date: Fri, 13 Nov 2009 08:15:33 -0500
> From: fis...@nmr.mgh.harvard.edu
> To: freesurfer...@hotmail.com
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] mris_make_template question
>
> Hi Guang,
>
> it still needs the ?h.sphere files as those are used to establish the
> spherical coordinate system.
>
> cheers,
> Bruce
> On Thu, 12 Nov 2009, Guang Zeng wrote:
>
> >
> > Hi, there,
> >
> > I am going to make our own template. Based on the introduction in
> > FreeSurfer WIKI "The Surface Registration Process; Template", the first
> > step is "Prep".
> >
> > "The process starts ("Prep") by choosing one reference subject, and
> > producing a template (Here, mytemp0.tif). No ?h.sphere is required --
> > this step uses the subject's own pattern as the reference."
> >
> > Here, I listed my script for this "Prep" step please let me if it is
> > correct:
> >
> > mris_make_template lh smoothwm sample_0 my_template0.tif
> > mris_make_template lh sulc sample_0 my_template0.tif
> > mris_make_template lh curv sample_0 my_template0.tif
> >
> > mris_make_template rh smoothwm sample_0 my_template0.tif
> >
> > mris_make_template rh sulc sample_0 my_template0.tif
> >
> > mris_make_template rh curv sample_0 my_template0.tif
> >
> > Thanks a lot!
> >
> > Guang
> >
> > _________________________________________________________________
> > Hotmail: Trusted email with powerful SPAM protection.
> > http://clk.atdmt.com/GBL/go/177141665/direct/01/
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