Alex, Can you send me the orig.mgz and .annot file used as input to this? To the file drop:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html Nick On Mon, 2009-10-19 at 13:38 +0100, Alex Fornito wrote: > Hi all, > I've tried running mri_label2vol on a few different computers now and keep > encountering the same memory error. Can anyone provide suggestions as to how > to get around this problem? I've included the output from a run using linux > on a dual 3.05 GHz Xeon with 8GB ram below. > Thanks for your help, > Alex > > > mri_label2vol --annot 1002593/label/fsavg_lh_500_compact.aparc.annot > --identity --temp 1002593/mri/orig.mgz --subject 1002593 --hemi lh --o > output.nii > Number of labels: 0 > Annot File: 1002593/label/fsavg_lh_500_compact.aparc.annot > Template Volume: 1002593/mri/orig.mgz > Outut Volume: output.nii > Registration File: (null) > Fill Threshold: 0 > Label Vox Vol: 1 > ProjType: (null) > ProjTypeId: 0 > ProjStart: 0 > ProjStop: 0 > ProjDelta: 0.1 > Subject: 1002593 > Hemi: lh > UseNewASeg2Vol: 1 > DoLabelStatVol 0 > $Id: mri_label2vol.c,v 1.25.2.3 2009/06/09 16:22:30 greve Exp $ > Template RAS-to-Vox: -------- > -1.000 0.000 0.000 128.000; > -0.000 -0.000 -1.000 128.000; > -0.000 1.000 -0.000 128.000; > 0.000 0.000 0.000 1.000; > Template Voxel Volume: 1 > nHits Thresh: 0 > Using Identity Matrix > RegMat: -------- > 1.000 0.000 0.000 0.000; > 0.000 1.000 0.000 0.000; > 0.000 0.000 1.000 0.000; > 0.000 0.000 0.000 1.000; > Label RAS-to-Vox: -------- > -1.000 0.000 0.000 128.000; > 0.000 0.000 -1.000 128.000; > 0.000 1.000 0.000 128.000; > 0.000 0.000 0.000 1.000; > INFO: loading surface > /work/imaging5/af397/twins/freesurfer/1002593/surf/lh.white > nvertices = 143248 > Reading thickness > /work/imaging5/af397/twins/freesurfer/1002593/surf/lh.thickness > Loading annotations from 1002593/label/fsavg_lh_500_compact.aparc.annot > reading colortable from annotation file... > colortable with 596 entries read (originally > /autofs/space/birn_044/users/christophe_atlas_rebuild/Simple_surface_labels2 > 005.txt) > annotidmax = 595 > Allocating Hit Volume (1392508928) voxels > MRIalloc(256, 256, 256): could not allocate 131072 bytes for 22406th slice > > Cannot allocate memory > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
