isxconcat-sess creates the files that you pass to mri_glmfit (ie, multi-frame volumes and/or surfaces where each frame is a subject). Something like:
AVG08/Analyse_Simple_Confidence/High_confidence__Low_confidence_vs_HSF_gabor__LSF_gabor/tal.ces.nii You can then use this as input to mri_glmfit passing it with the --y option. You can get more help from the FS FAST tutorial. Go to the wiki, type "isxconcat-sess" in the Search field, then hit the "Text" button. doug On Wed, 14 Oct 2009, Maximilien Chaumon wrote: > Hi freesurfers, > > I've been running isxconcat-sess with this line > > chaumon[/homes/11/chaumon/data] (nmr-std-env) isxconcat-sess -sf > subjlist.txt -analysis Analyse_Simple_Confidence -c > High_confidence__Low_confidence_vs_HSF_gabor__LSF_gabor -o AVG08 > > I was expecting to find a directory called osgm in the specified analysis > directory with which I could feed data to mri_glmfit, but I can't find it. > /homes/11/chaumon/bomba/AVG08/Analyse_Simple_Confidence/High_confidence__Low_confidence_vs_HSF_gabor__LSF_gabor > > The log file is attached. I don't find "error" in the text. > > Where am I wrong? > Is there any mri_glmfit-sess like script somewhere? It's going to be pretty > tough to find each parameter to feed to mri_glmfit... > > Thanks, > Max > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
