Sharif, what Pedro Paulo suggests is how we use our cluster here at the NMR Center: we simply treat each node as a separate machine, running an instance of recon-all. so with 200 nodes, 200 subjects can be processed. recon-all does not yet support multi-threading, so multi-core machines are not yet utililized (unless your PBS system is clever enough to treat each core as a node, which is the case with our own cluster management software, but this is outside the scope of recon-all).
Nick On Tue, 2009-10-13 at 13:53 -0300, Pedro Paulo de Magalhães Oliveira Junior wrote: > Depends on your cluster configuration. But if you are using a PBS > cluster you can just spawn one recon-all per subject and the queue > will take care of them. > > ----------------------------------------------------------- > Pedro Paulo de M. Oliveira Junior > Diretor de Operações > Netfilter & SpeedComm Telecom > --- Novo Netfilter 3.2 www.Netfilter.com.br > --- Novo Netfilter Small Business > > > > 2009/10/13 Sharif <shari...@math.uni-goettingen.de> > > Hi all there, > Could you please tell me how I can run freesurfer in a cluster > computer so that > I can use the full power of the cluster. > > Thank you very much for your kind attention. > > Regards, > Sharif > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
