Hi Ri, you have to be careful to only put the control points in voxels that are completely white matter (no partial voluming). I also don't know what you mean by "the control points didnt get converted to a continuous line". Can you elaborate?
cheers, Bruce On Tue, 8 Sep 2009, Ritobrato Datta wrote: > Hello All, > > I followed the steps in exercise C in the following page > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/ControlPoints > and added control points manually and then saved the Control Points by File > > Save Control Points > > Then I ran recon-all -autorecon2-cp -autorecon3 -s <subjid> > > After completion, I opened the viewer to check if it is implemented by > tkmedit <subjid> brainmask.mgz lh.white -aux T1.mgz -aux-surface rh.white > > But saw that the image where I added the control points didnt get converted > to a continuous line. I have attached a figure as an illustration. What am I > doing wrong ? > > Thanks > > Ri > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
