I think the brainmask looks fine.
In general, tissue being stripped off or large chunks of skull left
behind should be corrected as explained in the wiki.
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix
But small pieces of skull left is okay as long as
it's not affecting the surfaces.
Sita.
On Wed, 2 Sep 2009, Lena Palaniyappan wrote:
Hi all
I am not grasping the concept of skull strip correction full, Im afraid. I
have attached a brainmask 128th slice sagittal of which shows some uneven
stripping (I couldn¹t attach the huge T1 image to overlay) - is this degree
of tissue separation acceptable?
Where does one set a limit? The example set in tutorial data shows some very
obvious stripping errors, but the data I have shows really minor stuff and
I am always unsure whether to continue auto recon 2 or correct them. Any
help?
Many thanks in advance
Cheers
LKP
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