Hi Matt, you can give a -rl <volume name> switch to "reslice like" a template volume. For a parcellation you'll want -interp nearest (or something like that) also.
cheers, Bruce On Sun, 23 Aug 2009, Matt Glasser wrote: > I am curious about how to use mri_convert to convert wmparc.mgz back to the > space that the original nii.gz volume that I gave FreeSurfer was in without > resampling for further analysis with FSL. The volume I imported was > 176x208x176, and oriented xorient: Left to Right, yorient: Posterior to > Anterior, and zorient: Inferior to Superior. When I run mri_convert > wmparc.mgz wmparc.nii.gz I get a file that is 256x256x256, and oriented > xorient: Right to Left, yorient: Superior to Inverior, and zorient: > Posterior to Anterior. How do I use mri_convert to convert wmparc to the > original space without resampling? > > > > Thanks, > > > Matt. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
