That will not be able to separate the only frontal WM from the rest of the WM, isn't it? I have used FSL (a mix of bet,flirt and fnirt) with an atlas of the lobes (that covers WM and GM) for that kind of job
roberto On Tue, Aug 18, 2009 at 9:24 PM, Douglas N Greve<gr...@nmr.mgh.harvard.edu> wrote: > You can get the WM from our white matter segmentation (wmparc.mgz and > stats table wmparc.stats). You'd need to pick the cortical labels that > you want to define as the "frontal lobes". You should create a binary > mask with mri_binarize, passing the indices of the segments you want to > use with the --match option, then load the mask in tkmedit to see > whether it is what you expect. You can do a similar thing with the gray > matter, but you can get the volumes from the ?h.aparc.astats > > doug > > Jared Price wrote: >> Hi freesurfer gurus, >> We are doing some freesurfer processing for a collaborating lab and the >> PI has asked us for a measure of gray matter volume and a measure of >> white matter volume, both of which need to be specific to just the >> frontal lobes. Does anyone know of a simple, and accurate, way of >> acquiring these measures from freesurfer? >> Thanks. >> Jared >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
