It might not be oriented correctly. You can discern for yourself whether A/P and S/I are right, but you might not be able to tell L/R.
doug Ritobrato Datta wrote: > Hello All, > > I am trying to convert > > [...@home] /jet/subjects/002/Anatomy> mri_convert nAnatomical_fsl_FLOAT.img > nAnatomical_fsl_FLOAT.nii > mri_convert nAnatomical_fsl_FLOAT.img nAnatomical_fsl_FLOAT.nii > $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ > reading from nAnatomical_fsl_FLOAT.img... > ----------------------------------------------------------------- > INFO: could not find /jet/subjects/002/Anatomy/nAnatomical_fsl_FLOAT.mat file > for direction cosine info. > INFO: use Analyze 7.5 hdr->hist.orient value: 0, transverse unflipped > (default). > INFO: if not valid, please provide the information in > /jet/subjects/002/Anatomy/nAnatomical_fsl_FLOAT.mat file > ----------------------------------------------------------------- > TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-1, 0, 0) > j_ras = (0, 1, 0) > k_ras = (0, 0, 1) > writing to nAnatomical_fsl_FLOAT.nii... > > It wrote the .nii file and it looks the same as the .img qualitatively, but I > just thought I ask if I need the .mat file or if there is a better way to > compare whether the conversion worked correctly. > Please let me know. > > Thx > > Ri > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
