Hi, yes i have run the analysis and i found the sig.mgh file in the map of the contrast i am interested in. now i want to create a table with all significant clusters from my qdec analysis. i have learned that i need to use the mri_surfcluster command. however i am asked to specify a subject. but im not interested in single subjects, but in getting my qdec results into a tabel (all significant clusters (above .001) the amount of voxels and the average p value). or do i have to first run all the subjects seperatly?
thanks for all your help. rosa -------- Original-Nachricht -------- > Datum: Thu, 6 Aug 2009 10:23:25 -0400 (EDT) > Von: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > An: Rosa Steimke <rosastei...@gmx.de> > CC: Nick Schmansky <ni...@nmr.mgh.harvard.edu>, freesurfer@nmr.mgh.harvard.edu > Betreff: Re: [Freesurfer] Fwd: Re: correction for behavioral varialbles > in qdec > Hi Rosa, > > have you run the qdec analysis? It will create the sig.mgh (as well as > many other things) > > cheers, > Bruce > On Thu, 6 Aug 2009, Rosa Steimke wrote: > > > > > sorry, somehome i cannot figure it out... > > find | grep -f "sig\.mgh in my qdec map but it says that no such file > exist. do i have to make it? thanks for your help! > > rosa > > -------- Original-Nachricht -------- > >> Datum: Tue, 04 Aug 2009 13:40:07 -0400 > >> Von: Nick Schmansky <ni...@nmr.mgh.harvard.edu> > >> An: Rosa Steimke <rosastei...@gmx.de> > >> CC: freesurfer@nmr.mgh.harvard.edu > >> Betreff: Re: [Freesurfer] Fwd: Re: correction for behavioral varialbles > in qdec > > > >> cd $SUBJECTS_DIR/qdec > >> find | grep "sig\.mgh" > >> > >> will show you the location of the sig.mgh files, one for each analysis. > >> > >> > >> On Tue, 2009-08-04 at 19:33 +0200, Rosa Steimke wrote: > >>> -------- Original-Nachricht -------- > >>> Datum: Tue, 04 Aug 2009 19:33:18 +0200 > >>> Von: "Rosa Steimke" <rosastei...@gmx.de> > >>> An: Douglas N Greve <gr...@nmr.mgh.harvard.edu> > >>> Betreff: Re: [Freesurfer] correction for behavioral varialbles in qdec > >>> > >>> thanks, but which input file do i have to use? where can i find this > >> sig.mgh file from the qdec analysis? > >>> rosa > >>> -------- Original-Nachricht -------- > >>>> Datum: Tue, 04 Aug 2009 12:46:49 -0400 > >>>> Von: Douglas N Greve <gr...@nmr.mgh.harvard.edu> > >>>> An: Rosa Steimke <rosastei...@gmx.de> > >>>> CC: freesurfer@nmr.mgh.harvard.edu > >>>> Betreff: Re: [Freesurfer] correction for behavioral varialbles in > qdec > >>> > >>>> You can run mri_surfcluster on the sig.mgh for this kind of thing. > >>>> > >>>> doug > >>>> > >>>> Rosa Steimke wrote: > >>>>> Thanks Bruce!! > >>>>> now i wonder whether it is possible to get a table of all the > >>>> significant blobbs that i found in qdec that gives the size and > >> average p value or > >>>> some other way to find this out? > >>>>> rosa > >>>>> -------- Original-Nachricht -------- > >>>>> > >>>>>> Datum: Tue, 4 Aug 2009 08:13:01 -0400 (EDT) > >>>>>> Von: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > >>>>>> An: Rosa Steimke <rosastei...@gmx.de> > >>>>>> CC: freesurfer@nmr.mgh.harvard.edu > >>>>>> Betreff: Re: [Freesurfer] correction for behavioral varialbles in > >> qdec > >>>>>> > >>>>> > >>>>> > >>>>>> Hi Rosa, > >>>>>> > >>>>>> you have to select them. > >>>>>> > >>>>>> cheers, > >>>>>> Bruce > >>>>>> > >>>>>> On Tue, 4 Aug 2009, Rosa Steimke wrote: > >>>>>> > >>>>>> > >>>>>>> HI, > >>>>>>> i have a question regarding qdec. If i load a designfile with 4 > >>>>>>> > >>>>>> variables, but than i only select 1 for analysis, does qdec then > >>>> correct for the > >>>>>> other variables that i did not select? or do i have to select them? > >>>>>> > >>>>>>> thanks in advance!! > >>>>>>> rosa > >>>>>>> > >>>>>>> > >>>>>> _______________________________________________ > >>>>>> Freesurfer mailing list > >>>>>> Freesurfer@nmr.mgh.harvard.edu > >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>>>>> > >>>>> > >>>>> > >>>> > >>>> -- > >>>> Douglas N. Greve, Ph.D. > >>>> MGH-NMR Center > >>>> gr...@nmr.mgh.harvard.edu > >>>> Phone Number: 617-724-2358 > >>>> Fax: 617-726-7422 > >>>> > >>>> In order to help us help you, please follow the steps in: > >>>> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >>>> > >>>> > >>>> _______________________________________________ > >>>> Freesurfer mailing list > >>>> Freesurfer@nmr.mgh.harvard.edu > >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> -- > >>> GRATIS für alle GMX-Mitglieder: Die maxdome Movie-FLAT! > >>> Jetzt freischalten unter http://portal.gmx.net/de/go/maxdome01 > >>> > > > > -- GRATIS für alle GMX-Mitglieder: Die maxdome Movie-FLAT! Jetzt freischalten unter http://portal.gmx.net/de/go/maxdome01 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
