Hi Sameer, I don't think it'll affect your results, but before you rerun recon-all with -notal-check flag, check the registration in tkregister2 and make sure it's correct.
Sita. On Wed, 22 Jul 2009, sameer kumar wrote: > hi all, > I ran recon-all on a case, and it exited with errors, and the error message > looks like this: > > ERROR: Talairach QA check failed! > z-score = -6 <= -6 = threshold > Manual Talairach alignment may be necessary, or > include the -notal-check flag to skip this test, > making sure the -notal-check flag follows -all > or -autorecon1 in the command string. > > will there be a difference in the results if i use that flag to skip the > test? > > Thanks, > Regards, > Sameer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
