After fixing the Talairach registration, you need to rerun the whole recon-all process. The old files will be overwritten.
recon-all -all -s <subjectID>
And after adding control points, you need to run, recon-all -autorecon2-cp -autorecon3 -s <subjectID> Sita. On Thu, 16 Jul 2009, Ritobrato Datta wrote:
Hello all, I ran recon-all -autorecon-all -s <subjid> After it ran all the way through, I ran tkregister2 --mgz --s <subjid> --fstal --surf orig and saved everything with the SAVE REG button in the tkregister2 toolbar. Since I initially ran all the steps before the talairach touch-ups, what do I run to re-process the data and re-write with the new talairach modifications ? Do I have to use ' -force ' with the command ? I have a same question for the step, Using Control Points to Fix Intensity Normalization. What command do I run after I am done adding control points ? Thanks Ri _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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