Hello Doug,
Thanks so much for fixing this bug. I tried it and it works perfectly fine and it solves the problem that I had. Many thanks again, Nasim > Nasim and Judith (and everyone else), > > I've found and fixed a bug that was causing the surfcluster results for > the mc and perm simulations of absolute "abs" contrasts. > > To implement the fix, get Linux 64bit versions of these files and copy > them to $FREESURFER_HOME/bin (make backups of the originals:). > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surfcluster > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit > > You can then run something like: > > mri_glmfit-sim --glmdir yourglmdir --no-sim mc-z.abs > > The "--no-sim" option tells it NOT to do the full simulation again, just > use the CSDs that are there to recompute the cluster results for each > contrast, so it should be done in a matter of minutes. > > If you've used a permutation, then run > > mri_glmfit-sim --glmdir yourglmdir --no-sim perm.abs > > Please let me know if this fixes the problem. > > doug > > > > > > > > >
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