Hi Karl,
After the white matter edits, you can run
recon-all -autorecon2-wm -autorecon3 -s <subjID>
The old files will be overwritten.
Please refer to this wiki for more information on recon-all
http://surfer.nmr.mgh.harvard.edu/fswiki/recon-all
Sita.
On Thu, 11 Jun 2009, karlkarl wrote:
Hello, experts:
I have finished autorecon1-3 on the data. But now when I am examining the data,
some images need skull stripping and white matter editing. So I need to rerun
the steps.
If I strip the skull after autoreon1 and want to put it to autorecon2,
This should be: recon-all ¨Cs <participants> -autorecon2
And after fixing white matter problem from autorecon2
This should be: recon-all ¨Cs <participants> -autorecon3
All the old files will be automatically overwritten?
What is the most efficient way to redo the analysis after recon-all?
Thanks a lot!
Karl
_________________________________________________________________
Ô¼»á˵²»ÇåµØ·½£¿À´ÊÔÊÔ΢ÈíµØͼ×îÐÂmsn»¥¶¯¹¦ÄÜ£¡
http://ditu.live.com/?form=TL&swm=1
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
