Hello again, Sorry, I forgot to include the required info:
john FREESURFER_HOME: /trumpet/downloads/FreeSurfer/freesurfer Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.3.0 RedHat release: Fedora release 10 (Cambridge) Kernel info: Linux 2.6.27.21-170.2.56.fc10.x86_64 x86_64 --------------------------------------------------------------------- Please include the following additional information in your report: 1) subject name: convertedfile 2) the entire command-line executed: mris_anatomical_stats -mgz -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -cf ../label/aparc.annot.ctab convertedfile lh 3) the error message generated: Segmentation fault 4) optionally include the subject's /script/recon-all.log On Tue, May 26, 2009 at 2:23 PM, John Drozd <john.dr...@gmail.com> wrote: > Hello, > > I am running the reconall steps individually for a firts try. > > I noticed that I get a segmentation fault when I run mris_anatomical_stats > as whown below: > > [jdr...@trumpet mri]$ mris_anatomical_stats -mgz -f > ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -cf > ../label/aparc.annot.ctab convertedfile lh > INFO: assuming MGZ format for > volumes. > computing statistics for each annotation in ../label/lh.aparc.annot. > reading volume > /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/mri/wm.mgz... > reading input surface > /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white... > reading input pial surface > /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.pial... > reading input white surface > /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white... > reading colortable from annotation file... > colortable with 35 entries read (originally > /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) > Saving annotation colortable ../label/aparc.annot.ctab > > table columns are: > number of vertices > total surface area (mm^2) > total gray matter volume (mm^3) > average cortical thickness +- standard deviation (mm) > integrated rectified mean curvature > integrated rectified Gaussian curvature > folding index > intrinsic curvature index > structure name > > Segmentation fault > > john >
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