Andy, Possibly the colortable wasnt saved in the .gcs file. I've attached a couple scripts we use to create our .gcs files. The first, create_aparc_edited_annot, creates a .annot file from your labels. Note that all labels are explicitly listed. Then, the script build_desikan_killiany_gcs creates the .gcs file from the .annot file just created. Both scripts take the colortable file as input. The colortable file is the same format as the surface_labels.txt file, but just contains the labels composing the atlas (probably what you already have created for yourself).
Nick On Tue, 2009-05-26 at 10:50 -0700, xfore...@ucla.edu wrote: > Dear Freesurfer Experts, > > > > I was able to use mris_ca_train to produce a atlas (.gcs) file with all the > labels I am interested in, and I also modified the surface_labels.txt in the > freesurfer folder so only the labels I am interested are listed on the > txt file. > however, when I try to use mris_ca_label to apply the label onto the different > brain. The names of each label doesn't transfer, I'd get names like > parcellation 20 30 150. Is there anyway to fix this? > > > > > > sincerely, > Andy S > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
create_aparc_edited_annot
Description: application/shellscript
build_desikan_killiany_gcs.csh
Description: application/shellscript
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