Ok. Since the -fsv3 flag is now available in stable, I thought that might mean that I could could run selxavg3-sess in stable. It works fine in dev. I'm assuming that commands being run subsequently for group analyses (e.g. isxconcat, mri_glmfit) *can* be run in stable.
Jesse -- Jesse Friedman, B.A. Massachusetts General Hospital Martinos Center, Manoach Lab Psychiatric Neuroimaging 149 13th Street #2613 Charlestown, MA 02129 Phone: (617) 726-1908 Fax: (617) 726-4078 jes...@nmr.mgh.harvard.edu > > Are you using dev? Definitely won't work from stable. > > doug > > > > > On Thu, 30 Apr 2009, Jesse Friedman wrote: > >> Hi, >> >> I created an analysis using the -fsv3 flag and created a contrast: >> >> <mkanalysis-sess -analysis newEMerror_fsv3_std -TR 2 -paradigm error.par >> -designtype event-related -funcstem f0mcsm8 -tpef tpx.skip8.dat >> -nconditions 4 -timewindow 24 -prestim 4 -noautostimdur -fsv3> >> >> <mkcontrast-sess -contrast AScvfix -analysis newEMerror_fsv3_std -ncond >> 4 >> -wcond 0 1 0 0> >> >> and then ran selxavg3-sess: >> >> <selxavg3-sess -analysis newEMerror_fsv3_std -sf >> Subject_files/controlsVasd_jf.txt> >> >> which failed and gave me this error: >> >> <Computing ErrCovMtx >> ??? Undefined function or method 'fast_ecvm2wmtx' for input arguments of >> type 'double'. >> >> Error in ==> fast_selxavg3 at 492 >> [fsv3W fsv3AutoCor] = fast_ecvm2wmtx(ErrCovMtx);> >> >> Is this a bug, or is it that I shouldn't expect selxavg3 to work with an >> -fsv3 analysis in stable4? The -fsv3 flag was available in stabl4, so I >> gathered this meant I would be able to run selxavg3-sess in stable4. >> >> My bugr information is below. >> >> Thanks, >> Jesse >> >> FREESURFER_HOME: /usr/local/freesurfer/stable4 >> >> Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.3.0-20090430 >> >> RedHat release: CentOS release 4.7 (Final) >> >> Kernel info: Linux 2.6.9-78.0.13.ELsmp x86_64 >> >> NMR Center info (/space/freesurfer exists): >> >> machine: vantz >> >> SUBJECTS_DIR: /space/ventzl/16/users >> >> PWD: /space/ventzl/16/users >> >> ssh vantz >> setenv SUBJECTS_DIR /space/ventzl/16/users >> cd /space/ventzl/16/users >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
