to do which piece? The cortical areas you can run mri_annotation2label
and mri_label2vol on the labels you want. The subcortical one you can run
mri_extract_label on the aseg.mgz.
cheers,
Bruce
On Fri, 1 May 2009, Dr. Claudia
Wheeler-Kingshott wrote:
That's a great news! The problem is that I haven't been able to work out how
to do it :-[
Any instruction on the wiki? I haven't spotted them...
Cheers
Claudia
Bruce Fischl wrote:
Hi Claudia,
each subject that you have run through recon-all should have the full array
of anatomical regions, both cortical (e.g. precentral gyrus) and
non-cortical (e.g. putamen). You can extract them and create individual
volumes if you want.
cheers,
Bruce
On Fri, 1 May 2009, Dr. Claudia Wheeler-Kingshott wrote:
Hi,
We have done our region of interest statistical analysis in Stata and we
now would like to display the significant regions over the brain template.
I guess we need to have images of each individual region in order to do
so.
Does Freesurfer provide an individual image per each anatomical ROI
defined in the atlas, so that we can overlay only some of the regions?
best wishes
Claudia
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