I have the trouble to convert the BA label to annotation file. The Freesurfer 4.3.0 is on Mac OS 10.5.6. First, I got the BA label: mri_label2label --srcsubject fsaverage --srclabel fsaverage/label/lh.BA1.label --trgsubject 001 --trglabel 001/label/lh.BA1.label --hemi lh --regmethod surface This works. I can load the label onto the surface by using tksurfer. Select File->Label->Export Annotation. The Terminal window shows ³writing color table into annotation file...² and stop here. I checked the lh.BA1.annot, it¹s about 1MB. But when I try to load this annotation, the surfer warning me no lables imported and annotation was empty. I went to the command line and type in: mris_label2annot --s 001 --h lh --ctab 001/label/ba1.annot.ctab --l 001/label/lh.BA1.label --a BA1 Here is the message. subject 001 hemi lh SUBJECTS_DIR /Applications/freesurfer4.3/subjects ColorTable 001/label/ba1.annot.ctab AnnotName BA1 nlables 1 Loading /Applications/freesurfer4.3/subjects/001/surf/lh.orig 001/label/lh.BA1.label 001/label/lh.BA1.label 1 14465659 BA1 Mapping unhit to unknown Found 129453 unhit vertices Writing annot to /Applications/freesurfer4.3/subjects/001/label/lh.BA1.annot writing colortable into annotation file...
This seems work because I can load the annotation onto the surface. But what are the ³unhit vertices²? Is this normal? The last question: how can I get the voxel number (volume) of this label? Thanks. Wayne
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