Hi,
I created a triangular mesh of a marmoset cortex (layer 4) from histological
slices. Although the marmoset cortex is almost flat, it does have a very deep
calcarine sulcus and I need to push it out. I am hoping that it is possible to
feed the mesh to FreeSurfer so that it can be flattened. I have no need for the
GUI or any visualization. All I need is a flattened representation of the mesh.
Can anyone provide some hints about how I should begin?
The documents for mris_inflate and mris_flatten are pretty sparse. I imagine
that if I can save my mesh in the format that FreeSurfer uses, I will be able
to use the two command line tools to flatten. Does that seem sensible? Any
other processing/commands should be involved?
Thank you.
Hsin-Hao Yu
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