Thank you Bruce and Doug > but remember to delete the IsRunning file > > Bruce Fischl wrote: >> Hi Jake >> >> looks like recon-all stopped in the middle of running. You can see >> this because (1) the recon-all.log file is in the middle of the >> surface deformation, with no error message or termination notice, and >> (2) there is an IsRunning.lh+rh in the scripts dir, meaning FreeSurfer >> thinks the recon is currently running. You can finish it with: >> >> recon-all -s $subject -sd $SUBJECTS_DIR -make all >> >> cheers, >> Bruce >> >> >> On Tue, 10 Mar 2009 j...@nmr.mgh.harvard.edu wrote: >> >>> Hi All, >>> >>> I was just wondering if anyone has had data missing from the surf >>> directory in the recon folder of a subject, ie- right hemisphere data >>> is >>> missing, or no data at all. Here is the path to a recon where I >>> recently have found missing data: >>> >>> /space/amaebi/35/users/ablood/R01_Botox/R01BTX_recons/CD_R01BTX_pat2_sess4_recon_missing_surfdata >>> >>> >>> Any help would be greatly appreciated, >>> >>> thanks >>> Jake >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > >
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