Hi everyone,
I have recently started using the dt_recon processing
pipeline
in freesurfer. I just ran a dataset through it, and had a few questions
about
the methodology
1) How does the script calculate the mask from the DW data set. Is there any
way
to influence the mask calculation routine? I am familiar with bet/bet2 and i
have
an set of parameters tuned to my dataset. within dt_recon, i get the entire
volume
as a mask, while fsl generated a nice inclusive mask. Is there any way i can
use
the bet generated mask with dt_recon?
2) why is a glm fit done at the end of the processing stage?
best regards,
sid.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
