Oh, so it is just a visualization problem and not carried through into the data file. Viewing as you suggested, got rid of the problem. Thanks so much for the help! Angela
On 2/4/09 10:12 AM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > Hi Angela, > > this may just be a visualization artifact of the resampling to RAS > coords. You can try: > > view->anatomical sampling->main volume->slice > > which will show the raw (unoriented) data, or > > view->anatomical resampling->main volume->trilinear > > which will use trilinear interpolation instead of nearest neighbor. > > cheers, > Bruce > > > On Wed, 4 Feb 2009, Angela > Wang wrote: > >> I am using mri_convert to convert some MR images in dicom format to 001.mgz. >> When I view 001.mgz, using tkmedit, each transaxial slice looks like it is >> pieced together from the wrong slice of the original transaxials. As I >> progress from one slice to the next, this band moves across the image. >> >> It shouldn't look like this, should it?. Is there something I can do to >> prevent this when converting to mgz format? >> >> Angela >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> --- Angela Wang Research Analyst University of Utah Center for Alzheimer's Care, Imaging and Research (CACIR) 650 Komas Dr. Suite 106A Salt Lake City, UT 84108-1225 Phone: (801) 587-3694 Fax: (801) 581-2483 angela.y.w...@hsc.utah.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
