Dear Freesurfers,

I have a couple of question regarding the averaged map and resultant 
statistics. Starting from a population composed by three groups (controls, 
patients1, and patients2), and considering that my statistical comparisons will 
be:

Controls-patients1
Controls-patients2
Patients1-patients2

1) Should I build my averaged subject by including all subjects (controls, 
patients1, and patients2), independently of the pairwise comparison? Or just 
using the two subgroups of subjects included in each comparison? In the first 
case, we would use the same averaged map in all comparison. In the latter case, 
we would obtain 3 different averaged maps (one for each comparison).

2) How would affect the chosen averaged map method to build the resultant 
statistic? Is just a question of displaying, or it indeef affects to the 
obtained results?

Sorry for these basic questions, but I need to be sure before running my 
cortical thickness analysis.

Thanks in adavance.

Best,
Jose L. Cantero

---
Jose Luis Cantero, Ph.D.
Laboratory of Functional Neuroscience
Department of Physiology, Anatomy, and Cellular Biology
University Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Sevilla
- Spain -

Phone: +34 954 977433
Fax: +34 954 349151
Email: jlcan...@upo.es
http://www.upo.es/neuroaging/es/

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