Thanks for your help. I've realized that, when I save the project, and open them again, the SUBJECTS_DIR changes, but only for Qdec. But now it's running ok. Thank you.
> > You can try > > unsetenv SUBJECTS_DIR /tmp/qdec_project_archive > > and set the SUBJECTS_DIR to the right directory again. > > > Sita. > > > On Tue, 3 Feb 2009, Lucia Garrido wrote: > >> Many thanks for your e-mail. >> >> Yes, I've noticed that. But I made sure the SUBJECTS_DIR is the right >> one. >> Everything else is running without problems. And if I type cd >> $SUBJECTS_DIR, it goes to the right folder, which is not that folder on >> /tmp/qdec_project_archive. >> >> >> >>> >>> Your SUBJECTS_DIR is set to /tmp/qdec_project_archive, which is >>> probably >>> wrong. >>> >>> Lucia Garrido wrote: >>>> Dear all, >>>> >>>> I'm using Qdec and wanted to map an ROI to all participants in the >>>> study, >>>> but I always get an error. I've used FS 4.0.2 for recon-all for all >>>> subects. Now I'm running stats with FS 4.1.0 (I did 'recon-all -qcache >>>> -subjid <sub>' for each person using version 4.1.0). I'm using >>>> Debian.the >>>> qdec >>>> >>>> I've saved the ROI to the SUBJECTS_DIR folder. >>>> >>>> The error I get is: >>>> >>>> mri_label2label --srclabel rh.mtg1 --srcsubject fsaverage --trgsubject >>>> C01_CY --trglabel rh.mtg1 --regmethod surface --hemi rh >>>> >>>> srclabel = rh.mtg1 >>>> srcsubject = fsaverage >>>> trgsubject = C01_CY >>>> trglabel = rh.mtg1 >>>> regmethod = surface >>>> >>>> srchemi = rh >>>> trghemi = rh >>>> trgsurface = white >>>> srcsurfreg = sphere.reg >>>> trgsurfreg = sphere.reg >>>> usehash = 1 >>>> Use ProjAbs = 0, 0 >>>> Use ProjFrac = 0, 0 >>>> >>>> SUBJECTS_DIR is /tmp/qdec_project_archive >>>> FREESURFER_HOME is /home/lgarrido/freesurfer_v4.1.0/freesurfer >>>> Loading source label. >>>> Found 240 points in source label. >>>> Starting surface-based mapping >>>> Reading source registration >>>> /tmp/qdec_project_archive/fsaverage/surf/rh.sphere.reg >>>> MRISread(/tmp/qdec_project_archive/fsaverage/surf/rh.sphere.reg): >>>> could >>>> not open file >>>> No such file or directory >>>> ERROR: could not read >>>> /tmp/qdec_project_archive/fsaverage/surf/rh.sphere.reg >>>> command failed: mri_label2label --srclabel rh.mtg1 --srcsubject >>>> fsaverage >>>> --trgsubject C01_CY --trglabel rh.mtg1 --regmethod surface --hemi rh >>>> >>>> >>>> >>>> Many thanks for your help. >>>> >>>> Regards, >>>> >>>> Lucia >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> >>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
