recon-all will copy the brainmask.auto.mgz to the brainmask.mgz so they
should be the same.
Allison
On Tue, 2 Dec 2008, Barkay, Gavriel wrote:
Hi,
I ran recon-all -all crashed for reasons unrelated to FreeSurfer. I re-ran the
analysis without -clean.
Is the new skull stripped volume stored in brainmask.auto.mgz instead of
brainmask.mgz?
Thanks,
Gabi
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