Hi MOe,
You can make a label file of the region of interest from aseg file.
One easy way to do using matlab,
m = MRIread('aseg.mgz');
m.vol = (m.vol == ## | m.vol == ##);
MRIwrite(m,'roi.mgz');
## get from FreeSurferColorLUT.txt in freesurfer home.
pratap
> Hello,
>
> I'm doing a volume analysis and have found activation in my region of
> interest.
> I'm looking to present these data, but there are areas not of interest
> that also
> display activation, and so I'd like to leave them out of my image if
> possible as
> they are distracting. Does anyone have a suggestion on how I could label
> the
> area of interest, and then run an analysis such that
> activation/deactivation is
> only displayed in the labeled area?
>
> Thanks,
> Moe
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
