All those commands will do the same thing. When you pass mri_convert a
single dicom file, it looks at all the files in that directory and finds
all the dicoms that have the same series number, and puts them into one
volume.
Alexa Nardelli wrote:
Hi,
I have a question regarding converting files to mgz format from
siemens (dicom). Per each image I have 144 IMA files (i.e. for one
subject I have files from .001.IMA to .144.IMA) and I am wondering
how to convert those into 1 mgz file. The only way I seem to find is
to use the command:
mri_convert filename.001.ima subjectname/mri/orig/001.mgz
mri_convert filename.002.ima subjectname/mri/orig/002.mgz
...
mri_convert filename.144.ima subjectname/mri/orig/144.mgz
While this is painful and time consuming I also worry that in my
quest to find the hippocampal volumes, Freesurfer will not read these
files as one volume.
Is this the correct way to convert these files? Or is there another
easier way?
Thanks
Alexa
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