Hi,
I have a question regarding converting files to mgz format from
siemens (dicom). Per each image I have 144 IMA files (i.e. for one
subject I have files from .001.IMA to .144.IMA) and I am wondering how
to convert those into 1 mgz file. The only way I seem to find is to
use the command:
mri_convert filename.001.ima subjectname/mri/orig/001.mgz
mri_convert filename.002.ima subjectname/mri/orig/002.mgz
...
mri_convert filename.144.ima subjectname/mri/orig/144.mgz
While this is painful and time consuming I also worry that in my quest
to find the hippocampal volumes, Freesurfer will not read these files
as one volume.
Is this the correct way to convert these files? Or is there another
easier way?
Thanks
Alexa
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