Hi, I am getting an error with the command:
mri_ca_normalize -mask /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/brain.mgz -seg /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/cma_seg_noAA.mgz /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/nu.mgz -noatlas -noxform /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/norm_trn1.mgz using MR volume /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/brain.mgz to mask input volume... using segmentation volume /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/cma_seg_noAA.mgz to generate control points... reading 9 input volumess reading atlas from '8'... reading input volume from /Users/Nurunisa/Documents/MLS_STUDY/cma_segs/10281/mri/nu.mgz... reading input volume from -noatlas... mri_read(): couldn't determine type of file /Users/Nurunisa/Documents/MLS_STUDY/-noatlas mri_ca_normalize: could not read input MR volume from -noatlas end Is the flag -noatlas not valid? Or am I doing something wrong here? _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
