They are in aseg.mgz, you can extract them into a nifti file with
mri_binarize --i aseg.mgz --match 251 --o CC_Posterior.nii
251 is the code for CC Posterior (found in
$FREESURFER_HOME/FreeSurferColorLUT.txt)
doug
vin wrote:
hi,
I am trying to export segmented regions as NIFTI, and it works for the
regions like Thalamus whole. But when freesurfer finished autorecon,
than it showed lot of sub regions for example : Thalamic sub regions
and also CC_Posterior, CC_Mid_Posterior, CC_central (CC= Corpus
Callosum) and...Mid anterior and Anterior.
How I can get these sub regions. In which files they are stored, and
How I can extract them as NIFTI format.
any suggestion would be great !!
thank you very much ,
vin
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