Thanks a lot for clarification, Bruce. Best, Martin
On Thursday 28 August 2008 22:00:29 Bruce Fischl wrote: > Hi Martin, > > I think "recon-all -autorecon2-cp -autorecon3" should be fine (it's a > superset of the -wm stuff). > > Bruce > > On Thu, 28 Aug 2008, Martin Kavec wrote: > > Greetings to all, > > > > I have several pathological subjects, which need substantial editing > > involving removing of dura reminders, filling WM due to the lesions, and > > adding control points due to the WM atrophy. I ran "recon-all -all" first > > to have initial reconstruction, which helps me to focus on correcting the > > earlier mentions problems. I have corrected brainmask, wm, and created > > control points, and now I wonder if re-running "recon-all -autorecon2-cp > > -autorecon3" would be sufficient to get correct results, or should better > > run > > separately "recon-all -autorecon2-cp" followed > > by "recon-all -autorecon2-wm -autorecon3"? > > > > Thanks in advance, > > > > Martin > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
