you needa space between the -i and the path. Also, did you mean to include
the .mgz in the subject name? The volumes that are created will have the
.mgz extension, but we don't usually name our subjects with .mgz
On Mon, 30 Jun 2008, Daniel H
Choi wrote:
Hi,
I am trying to change my dicom files to mgz format. I know recon-all can do
this, however after the mgz file is created, tkmedit will not display it. As
described in the freesurfer-wiki site, there are steps outlining 2
acquisition directories. What does this specifically refer to? I assumed
that I only had one, and therefore entered the following:
recon-all -i
/mnt/win/MRI_data/MWIN4/O-08-003/DICOM/08021516/33420000/9003-0001-0001-00001.dcm
-s O_08_003.mgz
The error message said there might be something wrong with the data file
(unreadable, or wrong size). Is my command wrong?
Thanks.
Dan
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