Nick, Thanks for the hint. I already solved the problem.
We are testing a Cluster-on demand, pay-per-hour-used service in US and seems pretty good. I ran 100 recon-all in 33 hours!!! When I finish my tests I'll send a message to the list indicating this service. PPJ -----Original Message----- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: segunda-feira, 24 de março de 2008 12:53 To: Pedro Paulo Oliveira Jr Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] libXmu error on cluster Pedro, You have encountered the achilles heel of freesurfer running on a cluster. clusters often don't have the X-Windows libs (like libXmu) installed, because they dont need them. But mris_volmask is the one binary in the recon-all stream that is built against VTK, and VTK builds against X-Windows (at least on Linux, and our default distribution). I'd like to eliminate this dependency, but haven't had the time. You have three options: 1) copy the necessary X libs to your cluster (run ldd mris_volmask.bin to see them). 2) or use the -nocortribbon flag to skip that step (no downstream steps depend on the ?h.ribbon.mgz files) 3) or build freesurfer from source, based on a VTK which is built without an X Windows dependency. Nick On Sat, 2008-03-22 at 22:51 -0300, Pedro Paulo Oliveira Jr wrote: > Hi, > > > > I ran 40 process and all finished with > > > > /b/03/netfi01/freesurfer/subjects/rodiguespierinam/scripts/recon- > all.log:mris_volmask.bin: error while loading shared libraries: > libXmu.so.6: cannot open shared object file: No such file or directory > > > > But in /usr/lib there is a libXmu.so.6 > > > > My questions are: > > > > 1) Anybody know why it failed? > > 2) If I fix this how can I run recon-all from this point? > > > > Thanks > > > > PPJ > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
