Hi Doug,
I just tried to type in the command you sent me in the dev environment
and got this error:
ERROR: Flag -talxfm unrecognized.
-a MR-sm6-stc -m mask -o
MR-group-allsubjects-sm6-stc/MR-sm6-stc/tal.masks.mgz -interp nearest -fsd
bold -talres 2 -talxfm fsl-ta1.xfm -sf sessid_noproblem_all_subjects
even though I see this when I type isxconcat-sess -help
Volume-based options:
-talres res : 1 or 2 mm (def is 2)
-talxfm xfmfile : use xfmfile instead of talairach.xfm
Thanks,
Bill
On Tue, 11 Mar 2008, Doug Greve wrote:
I've just added something to do this. Add -talxfm fsl-tal.xfm to the cmd
line. Live on next dev update.
doug
Bill Monaco wrote:
Hi,
I wanted to know if it's possible to run isxconcat-sess but have it use
a different talairach transform when it calls mri_vol2vol. Currently the
default is mri/transforms/talairach.xfm, but I want it to use one I had
outputted from a previous processing step - mri/transforms/fsl-ta1.xfm
Is there an easy way to do this?
Thanks,
Bill
--
Bill Monaco
Research Assistant
MGH East - CNY 149
149 13th Street - 2271
Charlestown, MA 02129
617-726-9128
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