-
Hi,
we met some errors as below when we run "recon-all -subjid SUBNAME
-autorecon1". Similar questions have been asked in
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg06452.html
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg06739.html
But the answer seems not useful for our situation. We are performing
data processing pipeline with 3T MRI volume image. If we add
-notal-check, the errors will disappear but we are not sure whether it's
ok without Talairach check. Can anyone help us how to deal with them
when such errors appeared?
thanks
#--------------------------------------------
[EMAIL PROTECTED] Talairach Failure Detection Wed Feb 27 07:43:35 EST 2008
/Data/MAS/FreeSurfer/CPU7/3914_20070206_3dt1/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
talairach_afd: Talairach Transform: transforms/talairach.xfm OK
(p=0.7627, pval=0.6675 >= threshold=0.0050)
awk -f /usr/local/freesurfer4.0.2/bin/extract_talairach_avi_QA.awk
/Data/MAS/FreeSurfer/CPU7/3914_20070206_3dt1/mri/transforms/talairach_avi.log
TalAviQA: 0.94477
z-score: -7
ERROR: Talairach QA check failed!
z-score = -7 < -5 = threshold
Linux thalamus2007 2.6.23.15-80.fc7 #1 SMP Sun Feb 10 16:52:18 EST 2008
x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Wed Feb 27 07:43:35 EST 2008
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
