William, That error indicates that something was re-processed at a later date. The .thickness file is tied to a surface, but if the surface is re- generated later, it may create a surface with a different number of vertices, rendering the .thickness file invalid for that surface.
One way to make sure everything is up-to-date is to run: recon-all -s <subj> -make all (possibly adding the -dontrun flag first, to see what will run without actually running it). -make checks input/output file dependencies. Nick On Fri, 2008-02-01 at 13:42 -0500, William R Mcgarry wrote: > When running qcache (on a recent version of freesurfer) after running > recon-all -s 4964-14_recon -all command, I get the following error: > > ERROR: number of vertices in > /usr/local/freesurfer/subjects/4964-14_recon/surf/lh.thickness does not match > surface (138139,137319)ERROR: reading curvature file > Linux localhost.localdomain 2.6.23.14-107.fc8 #1 SMP Mon Jan 14 22:07:11 EST > 2008 x86_64 x86_64 x86_64 GNU/Linux > > Any ideas? This happens for multiple subjects without any known cause or > covariance. > > > --------------------------------------------------- > FREESURFER_HOME: /usr/local/freesurfer > > Build stamp: freesurfer-Linux-rh9-stable-pub-v4.0.2 > > RedHat release: Fedora release 8 (Werewolf) > > Kernel info: Linux 2.6.23.14-107.fc8 x86_64 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
