I just updated this page to include instructions on how to do this
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/FslGroupFeat
Nick Schmansky wrote:
Gui,
Have you had a look at the tutorial page that describes the
FSL/Freesurfer integration?
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial
see slide #4, and session 2b.
I can't offer any other help than this, as I do not have experience
performing this integration, but your approach is similar to the
tutorial.
Nick
On Tue, 2007-12-18 at 16:26 -0800, Gui Xue wrote:
Hi-I am trying to work out a work flow of integrating fsl and
freesurfer. the basic goal is to do surface-based group analysis.
what I have now is the run1.feat, run2.feat and mean.gfeat for each
subject done by FSL Feat and the processing anatomy using recon-all in
freesurfer. so the question now is how to combine them.
It seems to me that one way is to (1) use reg-feat2anat to register
the feat to freesurfer anatomy; (2) using mris_preproc to resample it
into common surface space, and (3) using mri_glmfit to computer the
mean for each subject; and repeat (2) and (3) for group analysis.
but if I want to use feat to do the whole statistics, I am not sure
how should I proceed. I will still use (1) to do the registration, and
use (4) feat2surf to resample each feat into common surface space.
but then I am not sure how to do statistics using Feat (both fixed
effect to combine two runs and random effect to combine across
subjects).
any help will be greatly appreciated.
Gui
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
