Juergen, Freesurfer doesnt automatically handle input images with a FOV > 256, so you must add this to your recon-all command:
-cropsize256 You would add that to the -autorecon1 stage, that is, start recon-all from the start with the -cropsize256 flag. Nick On Fri, 2007-12-14 at 08:42 +0100, Juergen Haenggi wrote: > Dear FS experts > > Here I found a warning that seem to be related to the error message I posted > before. > > mri_convert /usr/local/freesurfer/subjects/s237/mri/rawavg.mgz > /usr/local/freesurfer/subjects/s237/mri/orig.mgz --conform > WARNING > ==================++++++++++++++++++++++++================================== > ===== > The physical sizes are (299.52 mm, 299.52 mm, 176.85 mm), which cannot fit > in 256^3 mm^3 volume. > The resulting volume will have 300 slices. > The freesurfer tools should be able to handle more than 256 slices. > If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu). > ==================================================++++++++++++++++++++++++== > ============= > > Thanks > Regards > Juergen > > ----------------------------------------------------------- > Juergen Haenggi > Ph.D. (Dr. des.) > Division of Neuropsychology > Institute of Psychology > University of Zurich > Binzmuehlestrasse 14, PO Box 25 > 8050 Zurich, Switzerland > 0041 44 635 73 97 (phone office) > 0041 76 445 86 84 (phone mobile) > 0041 44 635 74 09 (fax office) > BIN 4.D.04 (office room number) > [EMAIL PROTECTED] (email) > http://www.psychologie.uzh.ch/neuropsy/ (website) > http://www.juergenhaenggi.ch (private website) > ----------------------------------------------------------- > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
