Hello all,
I was wondering if there is a quick way to make edits to multiple slices
of the aseg.mgz (or the brainmask.mgz) volume.
Specifically, I am working on my first subject, and it seems that on
almost every slice, pieces of the dura/skull/arachnoid/what-have-you get
segmented as cortex (less often, pieces of dura are included within the
boundary of the pial surface). I've worked on some slices by manually
removing/de-segmenting the pixels that need to go, but this is proving
to be extraordinarily time-consuming (some of the slices I've worked on
can take 10 minutes easily; perhaps I am obsessing too much, but am
trying to get it as close to perfect as it should look). For over 100
slices, even 5 minutes/slice of editing will take several hours. I tried
changing the mri_watershed parameter on another subject, but that didn't
seem to fix anything.
Any tips to save me hours will be greatly appreciated.
-Chris
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
