Hi Doug,
These are the commands that were used, or so I gather based on the file
dates. Shouldn't this have put them into a common talairach-based space?
#kthakkar 1/16/06
#*ASD v. Normals volume analysis*
intergroupavg-sess -analysis EMerror -contrast ASvfix -group1
BwGroupNormalsError5 -group2 BwGroupAspError5 -intergroup BwGroupError5
-space tal -spacedir tal
intergroupavg-sess -analysis EMerror -contrast ASevfix -group1
BwGroupNormalsError5 -group2 BwGroupAspError5 -intergroup BwGroupError5
-space tal -spacedir tal
intergroupavg-sess -analysis EMerror -contrast ASevASc -group1
BwGroupNormalsError5 -group2 BwGroupAspError5 -intergroup BwGroupError5
-space tal -spacedir tal
Thanks,
Rob
Doug Greve wrote:
how did you create BwGroupError5/bold/EMerror/tal-rfx/ASevfix/sig? It
is 64x64x20, which is probably your native functional space.
Robert Levy wrote:
Hi,
I have 3 contrasts between conditions in a between group comparison
on the volume, and I'm using mri_volcluster to get information about
the data. For some reason, while two of the contrasts (ASvfix and
ASevASc as shown below) are compatible with the register.dat file for
these contrasts, one of the contrasts (ASevifx) is not compatible.
I'm not sure why or how this could be the case, but I need to
register it somehow, in order for the talairach coordinates to be
listed correctly. What do you think is wrong or different about this
one contrast? Is there anything that I can do to fix this
incompatibility so that it will register the correct coordinates?
(detailed info for reproducing the problem is included below).
Thanks,
Rob
To reproduce the problem:
source /usr/local/freesurfer/nmr-dev-env
# ( but I also get the same exact results using stable 3 )
setenv SUBJECTS_DIR /space/ventzl/1/users/SUBJECTS_DIR
cd $SUBJECTS_DIR
# this contrast is not compatible with register.dat
mri_volcluster \
--in BwGroupError5/bold/EMerror/tal-rfx/ASevfix/sig_000.bfloat \
--thmin 3.230014 \
--reg BwGroupError5/bold/EMerror/tal-rfx/register.dat \
--frame 6
# these 2 contrasts work
mri_volcluster \
--in BwGroupError5/bold/EMerror/tal-rfx/ASvfix/sig_000.bfloat \
--thmin 4.668773 \
--reg BwGroupError5/bold/EMerror/tal-rfx/register.dat \
--frame 6
mri_volcluster \
--in BwGroupError5/bold/EMerror/tal-rfx/ASevASc/sig_000.bfloat \
--thmin 3.524190 \
--reg BwGroupError5/bold/EMerror/tal-rfx/register.dat \
--frame 6
--
Robert P. Levy, B.A.
Research Assistant, Manoach Lab
Massachusetts General Hospital
Charlestown Navy Yard
149 13th St., Room 2611
Charlestown, MA 02129
email: [EMAIL PROTECTED]
phone: 617-726-1908
fax: 617-726-4078
http://nmr.mgh.harvard.edu/manoachlab
------------------------------------------------------------------------
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
--
Robert P. Levy, B.A.
Research Assistant, Manoach Lab
Massachusetts General Hospital
Charlestown Navy Yard
149 13th St., Room 2611
Charlestown, MA 02129
email: [EMAIL PROTECTED]
phone: 617-726-1908
fax: 617-726-4078
http://nmr.mgh.harvard.edu/manoachlab
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