I tired setenv UNPACK_MGH_DTI 0 but that unfortunately did not work. I am
still getting the same error.
unpacking in stable3 seems to work though.
Thanks!
Akram.
On Tue, 4 Sep 2007, Doug Greve wrote:
This might be the same problem. Try
setenv UNPACK_MGH_DTI 0
and then unpack. I'll take a look when I'm back next week.
doug
On Tue, 4 Sep 2007, Akram Bakkour wrote:
when I unpack a single run I get an error which I've never encountered
before. I get the same error in std and dev
cd
/space/madrc/1/users/MADRC_ARCHIVE/MGH_MADRC_ARCHIVE/MGH_MADRC_ARCHIVE_BAY4
unpacksdcmdir -src 08242007_4TT_clindem93/dicom -targ
08242007_4TT_clindem93/raw -run 15 MEMPRAGE mgz MEMPRAGE.mgz
here is the end of the output
Run 15 -----------------------------------------
Tue Sep 4 11:52:48 EDT 2007
15 MEMPRAGE mgz MEMPRAGE.mgz
mri_convert 08242007_4TT_clindem93/dicom/00140001
08242007_4TT_clindem93/raw/MEMPRAGE/015/MEMPRAGE.mgz --sdcmlist
08242007_4TT_clindem93/raw/MEMPRAGE/015/flf -ot mgz --nspmzeropad 3
--in_type siemens_dicom
ERROR: mri_convert
child killed: segmentation violation
when I run
mri_convert 08242007_4TT_clindem93/dicom/00140001
08242007_4TT_clindem93/raw/MEMPRAGE/015/MEMPRAGE.mgz --sdcmlist
08242007_4TT_clindem93/raw/MEMPRAGE/015/flf -ot mgz --nspmzeropad 3
--in_type siemens_dicom
I get this
ERROR: cannot extract sDiffusion.alBValue[1] from
08242007_4TT_clindem93/dicom/00140001
Segmentation fault
Any suggestions?
Thanks!
Akram.
--
Akram Bakkour
Gerontology Research Unit
149 13th Street, Suite 2691
Charlestown, MA 02129
tel: 617-726-5571
fax: 617-726-5760
web: http://www.dickersonlab.org
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