Claus, Has the recon-all -qcache been run for the subject nmr00199? If so, was there a significant number of days since -qcache was run on the other subjects? If so, you may need to run recon-all -qcache on all the subjects you want to use with qdec.
Nick On Tue, 2007-08-14 at 18:59 -0400, Claus Reinsberger wrote: > Hi everybody, > > I tried to run the qdec-tool in the dev-env, but experienced some > problems > with my last subject. This is the environment, I'm working in: > > FREESURFER_HOME: /usr/local/freesurfer/dev > Build stamp: freesurfer-Linux-centos4-dev-20070811 > RedHat release: CentOS release 4.4 (Final) > Kernel info: Linux 2.6.9-42.0.3.ELsmp i686 > NMR Center info (/space/freesurfer exists): > machine: tkmeg > SUBJECTS_DIR: /space/megraid/83/MEG-MRI/seder/freesurfer/ > PWD: /space/megraid/83/MEG-MRI/seder/freesurfer > > > ... and here's the error I get when I start the group analysis in > qdec, > subj nmr00199 is the one I added (after I ran -qcache): > > ERROR: dimension mismatch between > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/nm > r00188_a/surf/lh.thickness.fwhm10.fsaverage.mgh and > /autofs/space/megraid_083/MEG-MRI/s > eder/freesurfer/nmr00199/surf/lh.thickness.fwhm10.fsaverage.mgh > Error in Analyze: command failed: mri_concat > /autofs/space/megraid_083/MEG-MRI/seder/fr > eesurfer/nmr00188_a/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/ME > G- > MRI/seder/freesurfer/nmr00172_a/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/ > megraid_083/MEG- > MRI/seder/freesurfer/nmr00035/surf/lh.thickness.fwhm10.fsaverage.mgh > /a > utofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00039_a/surf/lh.thickness.fwhm10.fs > average.mgh > /autofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00046/surf/lh.thickne > ss.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/nmr00127/sur > f/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/ > nmr00156/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder > /freesurfer/nmr00158/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/M > EG- > MRI/seder/freesurfer/nmr00159/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/m > egraid_083/MEG- > MRI/seder/freesurfer/nmr00180_a/surf/lh.thickness.fwhm10.fsaverage.mgh > / > autofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00189_a/surf/lh.thickness.fwhm10.f > saverage.mgh > /autofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00034/surf/lh.thickn > ess.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/nmr00031_a/ > surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurf > er/nmr00070/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/se > der/freesurfer/nmr00098/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_08 > 3/MEG- > MRI/seder/freesurfer/nmr00013/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/spac > e/megraid_083/MEG- > MRI/seder/freesurfer/nmr00182_a/surf/lh.thickness.fwhm10.fsaverage.mg > h > /autofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00052/surf/lh.thickness.fwhm10. > fsaverage.mgh > /autofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00123/surf/lh.thick > ness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/nmr00076/s > urf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurfe > r/nmr00183_a/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/s > eder/freesurfer/nmr00184_a/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs/space/megraid > _083/MEG- > MRI/seder/freesurfer/nmr00181_a/surf/lh.thickness.fwhm10.fsaverage.mgh > /autofs > /space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00068/surf/lh.thickness.fwhm10.fsaverage > .mgh > /autofs/space/megraid_083/MEG- > MRI/seder/freesurfer/nmr00073/surf/lh.thickness.fwhm > 10.fsaverage.mgh > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/nmr00199/surf/lh.th > ickness.fwhm10.fsaverage.mgh --o > /autofs/space/megraid_083/MEG-MRI/seder/freesurfer/qde > c/Untitled/y.mgh > > > > > Could this be due to the dev-env of the qcache-command (the log says > everything went fine)? Autorecon-3 also seems to have run fine in this > patient. > > Thanks a lot for your help, > > Claus > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
