Hi Graham,
Another way is to generate your TCL on the fly, see below for a simple
example:
- snip -
#!/bin/sh
outdir=/usr/people/johannes/scratch/fssubjects/pictures
mkdir -p $outdir
cd $SUBJECTS_DIR
# put your subjects here
for f in CONTROL*; do
for hemi in lh rh; do
echo "scale_brain 1.05
redraw
save_tiff ${outdir}/${f}_thickness_${hemi}.tiff
exit" > /tmp/prettypic_$$.tcl
tksurfer $f $hemi inflated -overlay $f/surf/${hemi}.thickness -tcl
/tmp/prettypic_$$.tcl
done
done
rm /tmp/prettypic_$$.tcl
- snap -
Cheers,
Johannes
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