Hi Doug, That version seems to do the trick! Thanks!
Emily On 3/20/07, Doug Greve <[EMAIL PROTECTED]> wrote:
Sorry, fell thru the cracks the first time. Which version of freesurfer are you using? The stable versions do not allow writing of mgh files from mris_convert. I've put a new version here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_convert See if that works doug Emily Cooper wrote: > Hi Freesurfer Community, > > I sent this message to the mailinglist a little bit ago. It never > showed up in my mailbox, although it seems to have posted on the > mailinglist website. Anyway, on the chance that it didn't mail out > properly, I thought I'd resend it, as I still havent been able to > figure out what I'm doing wrong. > > Thanks! > Emily > > ---------- Forwarded message ---------- > From: Emily Cooper <[EMAIL PROTECTED]> > Date: Mar 9, 2007 2:27 PM > Subject: mris_convert > To: freesurfer@nmr.mgh.harvard.edu > > > Hi, > > I have a question about using mris_convert to convert .asc to .mgh. I > have a .mgh file I made with mri_vol2surf (target subject as > fsaverage). I convert it to .asc using this command: > > mris_convert -c 010.onerun.space.intval.lh.fsave.mgh tkregister2/ > /home/ecooper/subjects/fsaverage/surf/lh.white lh.010mg2txt.asc > > then I try to convert it from .asc to .mgh using this command: > > mris_convert -c lh.010mg2txt.asc > /home/ecooper/subjects/fsaverage/surf/lh.white lh.010mg2txt2mg.mgh > > but when I try to load the new .mgh (lh.010mg2txt2mg.mgh) in tksurfer > as an overlay: > > tksurfer fsaverage lh inflated & > > I get this error: > > % Loading tal xfm file > /home/ecooper/subjects/fsaverage/surf/../mri/transforms/talairach.xfm > MRIalloc: could not allocate 443 slices > Cannot allocate memory > >> From the documentation of mris_convert, it seems that > > lh.010mg2txt2mg.mgh should be identical to the original .mgh > (010.onerun.space.intval.lh.fsave.mgh). Is mris_convert unable to > convert .asc to .mgh? Or is there something wrong with my commands? > > Thanks for your time! > Emily > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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