The images are originally dicom that are converted to 4dfp. The 4dfp is then converted to mgz.
I am unable to view the images with the tkmedit -f sessionname.dcm command I am assuming this is because we are using the 4dfp rather than dicom. The images undergo no processing in terms of flipping or rotation about the axis from dicom tot 4dfp - they are concatenated. Thanks. Lindsay On 3/12/07, Doug Greve <[EMAIL PROTECTED]> wrote:
What is the original source of the images? If dicom, try loading the dicom directly into tkmedit, something like: tkmedit -f image.dcm Which axis is it flipped around? Lindsay Casmaer wrote: > Hello, > > After running autorecon1 and viewing the brainmask.mgz images with > tkmedit, the images appear rotated 180 degrees. > > Any suggestions on how this might be corrected would be greatly > appreciated. > > The images are Seimens 3T Trio images that were converted without > errors to the mgz format. > > Thanks, > Lindsay > > Lindsay J. Casmaer > Washington University in St. Louis > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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